| Cover | | Date  | Title • Artist  Album | Points  | Charts Peaks | Comment |
|---|
| 1. | 04/2006 | | 580
 | US 6 UK 2 US rock ✫1 US alt. ✫1 | [Warner Digital] written by Anthony Kiedis, Flea, John Frusciante & Chad Smith |
| 2. | 10/2006 | | 405
 | US 44 US rock ✫1 US alt. ✫1 | [Jive Digital] written by Three Days Grace, Barry Stock & Gavin Brown (as Gavin "Golden" Brown) |
|
| 3. | 09/2006 | | 380
 | US 9 UK ✫1 US rock 24 US alt. ✫1 | [Reprise Digital] written by Gerard Way, Mikey Way, Ray Toro, Bob Bryar & Frank Iero |
| 4. | 04/2006 | | 368
 | US 60 US rock ✫1 US alt. ✫1 | [Jive Digital] written by Three Days Grace |
| 5. | 06/2006 | | 343
 | US 22 UK 16 US rock 3 US alt. ✫1 | [Warner Digital] written by Anthony Kiedis, Flea, John Frusciante & Chad Smith |
| 6. | 06/2006 | | 337
 | US 39 UK 98 US rock ✫1 US alt. 2 | [Roadrunner Digital] written by Corey Taylor, James Root, Josh Rand, Shawn Economaki & Roy Mayorga |
| 7. | 04/2006 | | 336
 | US 2 UK ✫1 US AC 7 US dance 23 US R&B 53 US alt. 7 | [Downtown 70002] written by Danger Mouse (as Brian Burton), Cee Lo Green (as Thomas Callaway), Gian Franco Reverberi & Gian Piero Reverberi |
| 8. | 04/2006 | | 327
 | US 3 US rock 3 US alt. 8 | [Universal Republic Digital] written by Austin Winkler, Joe "Blower" Garvey, Mark King, Mike Rodden, Cody Hanson & Brian Howes |
| 9. | 07/2006 | | 311
 | US 14 UK 2 US dance 5 US rock 30 US alt. ✫1 | [Island 007884] written by Brandon Flowers, Dave Keuning, Mark Stoermer & Ronnie Vannucci (as Ronnie Vannucci Jr.) |
| 10. | 03/2006 | | 283
 | US 41 US rock 2 US alt. ✫1 | [J Digital] written by Eddie Vedder |
| 11. | 08/2006 | | 279
 | US 94 US rock ✫1 US alt. 5 | written by Danny Carey, Maynard James Keenan, Adam Jones & Justin Chancellor |
| 12. | 10/2006 | | 279
 | US 66 UK 109 US rock 4 US alt. ✫1 | [Immortal Digital] written by Brandon Boyd, Mike Einziger, Chris Kilmore, Ben Kenney & José Pasillas |
| 13. | 07/2006 | | 279
 | US 50 UK 16 US rock 8 US alt. ✫1 | [Warner Digital] written by Anthony Kiedis, Flea, John Frusciante & Chad Smith |
| 14. | 07/2006 | | 263
 | US 6 UK 15 US rock 4 US alt. 37 | [UK Record of the Year 2008] [Roadrunner Digital] written by Chad Kroeger, Ryan Peake, Mike Kroeger & Daniel Adair |
| 15. | 06/2006 | | 260
 | US 50 US rock 2 US alt. 4 | [Arista Digital] written by Benjamin Burnley |
| 16. | 12/2006 | | 259
 | US 2 UK 2 US alt. 8 | [Fueled By Raman/Island] written by Patrick Stump, Pete Wentz, Joe Trohman & Andy Hurley |
| 17. | 05/2006 | | 259
 | US 24 UK 44 US rock 13 US alt. ✫1 | [Tiny Evil Digital] written by AFI |
| 18. | 12/2006 | | 255
 | US 4 UK 128 US AC 18 US rock 5 US alt. 17 | [RCA Digital] written by Chris Daughtry, Gregg Wattenberg, Mark Wilkerson & Brett Young |
| 19. | 04/2006 | | 254
 | US 54 UK 4 US rock 30 US alt. ✫1 | [Third Man 27846] written by Brendan Benson & Jack White |
| 20. | 06/2006 | | 254
 | US 5 UK 6 US alt. 8 | [Polydor/A&M Digital] written by Gary Lightbody, Nathan Connolly, Paul Wilson, Jonny Quinn & Tom Simpson |
| 21. | 04/2006 | | 252
 | US 3 UK 4 US AC ✫1 US alt. 31 | [Epic Digital] written by Joe King, Isaac Slade, Dave Welsh & Ben Wysocki |
| 22. | 05/2006 | | 249
 | US 115 US rock 2 US alt. 2 | [album cut] written by Danny Carey, Maynard James Keenan, Adam Jones & Justin Chancellor |
| 23. | 02/2006 | | 246
 | US 85 US rock ✫1 US alt. 10 | [Universal Republic Digital] written by Sully Erna, Tony Rombola, Robbie Merrill & Shannon Larkin |
| 24. | 11/2006 | | 234
 | US 76 US rock 11 US alt. ✫1 | [Immortal Digital] written by Jared Leto, Shannon Leto, Matt Wachter & Tomo Miličević |
| 25. | 08/2006 | | 232
 | US 10 UK 4 US alt. 4 | [Wind-up Digital] written by Amy Lee & Terry Balsamo |
| 26. | 07/2006 | | 226
 | US 105 UK 79 US rock ✫1 US alt. 18 | [album cut] written by Tony Banks, Phil Collins & Mike Rutherford |
| 27. | 12/2006 | | 225
 | US 2 UK 2 US AC 3 | featuring Akon [Interscope Digital] written by Gwen Stefani, Akon & Giorgio Tuinfort |
| 28. | 03/2006 | | 224
 | US 65 UK 64 US rock 14 US alt. 3 | [Immortal Digital] written by Jared Leto |
| 29. | 02/2006 | | 218
 | US 31 UK 31 US rock 21 US alt. 2 | [Universal Motown Digital] written by Justin Furstenfeld |
| 30. | 02/2006 | | 218
 | UK 64 US rock 6 US alt. 2 | charted as No Way Back / Cold Day in the Sun in UK charts written by Dave Grohl, Taylor Hawkins, Nate Mendel & Chris Shiflett |
| 31. | 08/2006 | | 214
 | US 24 US rock 38 US alt. 3 | [Virgin Digital] written by The Red Jumpsuit Apparatus & Ronnie Winter |
| 32. | 07/2006 | | 214
 | US 79 UK 92 US rock 4 US alt. 3 | [Interscope Digital] written by Audioslave |
| 33. | 01/2006 | | 212
 | US 88 US rock 2 US alt. 8 | [Atlantic Digital] written by Brent Smith, Brad Stewart & Tony Battaglia |
| 34. | 03/2006 | | 196
 | US 59 US rock 3 US alt. 13 | [Eleven Seven Digital] written by Josh Todd & Keith Nelson |
| 35. | 03/2006 | | 194
 | US 79 UK 63 US dance 29 US rock 4 US alt. 14 | [Virgin Digital] written by Jonathan Davis [Korn], James Shaffer (as James "Munky" Shaffer), Reginald Arvizu (as Reginald "Fieldy" Arvizu), David Silveria, Lauren Christy, Graham Edwards & Scott Spock |
| 36. | 12/2006 | | 193
 | US 88 UK 8 US rock 23 US alt. 4 | [Reprise Digital] written by Gerard Way, Mikey Way, Ray Toro, Bob Bryar & Frank Iero |
| 37. | 11/2006 | | 171
 | US 101 UK 199 US rock 2 US alt. 25 | [album cut] written by Josey Scott, Wayne Swinny, Dave Novotny, Jonathan Montoya, Paul Crosby & Bob Marlette |
| 38. | 12/2006 | | 170
 | US rock 2 US alt. 21 | written by Corey Taylor, James Root, Josh Rand, Shawn Economaki & Roy Mayorga |
| 39. | 04/2006 | | 169
 | US 112 UK 31 US rock 7 US alt. 10 | [Modular 37025] written by Andrew Stockdale, Chris Ross & Myles Heskett |
| 40. | 09/2006 | | 168
 | US 101 UK 13 US alt. 2 | written by Matthew Bellamy, Christopher Wolstenholme & Dominic Howard |
| 41. | 06/2006 | | 165
 | UK 4 US alt. 6 | written by Matthew Bellamy, Christopher Wolstenholme & Dominic Howard |
| 42. | 06/2006 | | 164
 | US 7 UK 25 US alt. 12 | [MTV Video Music Award for Video of the Year 2006] [Decaydance Digital] written by Ryan Ross |
| 43. | 09/2006 | | 160
 | US rock 3 US alt. 21 | written by Dean DeLeo, Robert DeLeo & Richard Patrick |
| 44. | 07/2006 | | 159
 | US rock 4 US alt. 28 | written by Brent Smith, Jasin Todd & Tony Battaglia |
| 45. | 08/2006 | | 155
 | US 109 UK 23 US rock 15 US alt. 7 | [album cut] |
| 46. | 03/2006 | | 151
 | US 19 UK 77 US AC 29 US rock 11 US alt. 29 | [Roadrunner Digital] written by Chad Kroeger, Ryan Peake, Mike Kroeger & Daniel Adair |
| 47. | 10/2006 | | 148
 | US 9 UK 7 US alt. 32 | [Grammy Award for Song of the Year 2008]
[Grammy Award for Record of the Year 2008] [Universal Republic 008491] written by Amy Winehouse |
| 48. | 06/2006 | | 145
 | US 114 UK 8 US rock 22 US alt. 15 | [Columbia 76172] written by Ian Watkins, Jamie Oliver, Lee Gaze, Mike Lewis & Stuart Richardson |
| 49. | 10/2006 | | 144
 | US 51 UK 2 US rock 33 US alt. 22 | [Island Digital] written by Richard Jobson & Stuart Adamson |
| 50. | 08/2006 | | 144
 | US 116 UK 171 US rock 8 US alt. 14 | [album cut] written by Jacoby Shaddix & Tobin Esperance |
| 51. | 11/2006 | | 143
 | US 6 UK 3 US dance 5 | [Interscope Digital] written by Richard Rodgers, Oscar Hammerstein II, Gwen Stefani & Pharrell Williams |
| 52. | 03/2006 | | 141
 | US 123 US rock 10 US alt. 10 | [album cut] written by Daron Malakian |
| 53. | 06/2006 | | 137
 | US 78 UK 3 US dance 10 US alt. 18 | [Interscope Digital] written by Tim Rice-Oxley, Tom Chaplin & Richard Hughes |
| 54. | 07/2006 | | 137
 | US rock 4 US alt. 31 | written by Sully Erna |
| 55. | 04/2006 | | 132
 | US 55 UK 20 US alt. 5 | [Suretone Digital (Geffen)] written by Tom DeLonge, David Kennedy, Ryan Sinn & Atom Willard |
| 56. | 02/2006 | | 124
 | US 77 UK 26 US alt. 5 | [Decaydance Digital] written by Ryan Ross |
| 57. | 01/2006 | | 123
 | US rock 4 | written by Chad Gray, Ryan Martinie, Matt McDonough & Greg Tribbett |
| 58. | 11/2006 | | 120
 | US rock 4 | written by Sully Erna |
| 59. | 06/2006 | | 120
 | UK 110 US rock 13 US alt. 10 | written by Stone Gossard & Eddie Vedder |
| 60. | 10/2006 | | 119
 | US 68 UK 76 US alt. 4 | [Tiny Evil Digital] written by AFI |
| 61. | 03/2006 | | 112
 | US rock 8 US alt. 29 | written by Shaun Morgan |
| 62. | 12/2006 | | 111
 | US rock 7 US alt. 37 | written by David Draiman, Dan Donegan, Mike Wengren & John Moyer |
| 63. | 10/2006 | | 110
 | US rock 6 US alt. 38 | written by Audioslave |
| 64. | 07/2006 | | 110
 | UK 10 US alt. 10 | [Download-only release] written by Matthew Bellamy, Christopher Wolstenholme & Dominic Howard |
| 65. | 04/2006 | | 109
 | UK 5 US alt. 22 | written by Paul Garred, Hugh Harris, Luke Pritchard & Max Rafferty |
| 66. | 11/2006 | | 108
 | UK ✫1 | [BRIT Awards Best British Single 2007] [UK Record of the Year 2006] written by Howard Donald, Gary Barlow, Jason Orange, Mark Owen & John Shanks |
| 67. | 02/2006 | | 108
 | UK 29 US rock 13 US alt. 30 | written by Matthew Tuck, Michael "Padge" Paget, Jason James & Michael "Moose" Thomas |
| 68. | 09/2006 | | 107
 | US 102 UK ✫1 | with Elton John [album cut] written by Babydaddy (as Scott Hoffman), Jake Shears (as Jason Sellards) & Elton John |
| 69. | 09/2006 | | 106
 | UK 69 US rock 19 US alt. 18 | written by Stephen Carpenter, Chi Cheng, Abe Cunningham, Frank Delgado & Chino Moreno |
| 70. | 04/2006 | | 106
 | US 48 UK 36 US alt. 8 | [Warner Digital] written by Taking Back Sunday |
| 71. | 02/2006 | | 105
 | US 4 UK 9 | [Walt Disney album cut] written by Jamie Houston |
| 72. | 11/2006 | | 104
 | US 14 UK 4 | [Drive-thru Digital] written by Forrest Kline |
| 73. | 02/2006 | | 103
 | US rock 8 US alt. 26 | written by Rob Zombie & Scott Humphrey |
| 74. | 06/2006 | | 103
 | US 125 US rock 13 US alt. 31 | [album cut] written by Sameer Bhattachararya, James Culpepper, Jared Hartmann, Lacey Mosley & Pat Seals |
| 75. | 02/2006 | | 96
 | US 8 UK 40 US AC 5 | [Roadrunner Digital] written by Chad Kroeger, Ryan Peake, Mike Kroeger & Daniel Adair |
| 76. | 04/2006 | | 95
 | US rock 12 US alt. 32 | written by Rob Zombie, John 5 & Scott Humphrey |
| 77. | 12/2006 | | 94
 | US alt. 7 | written by Tim McIlrath, Joe Principe, Brandon Barnes & Chris Chasse |
| 78. | 10/2006 | | 94
 | US rock 6 | written by Austin Winkler, Joe "Blower" Garvey, Mark King, Mike Rodden, Cody Hanson, Brian Howes & Joey Moi |
| 79. | 10/2006 | | 92
 | UK ✫1 | written by Razorlight |
| 80. | 03/2006 | | 91
 | UK ✫1 | written by Orson |
| 81. | 01/2006 | | 90
 | UK ✫1 | written by Alex Turner |
| 82. | 02/2006 | | 90
 | US 88 UK 18 US alt. 14 | [Dress Up 006336] written by Brian Chase, Karen O (as Karen Orzolek) & Nick Zinner |
| 83. | 07/2006 | | 90
 | US ✫1 US AC 14 | [Arista 85833] written by Paul Wilson, Andy Watkins & Tracy Ackerman |
| 84. | 12/2006 | | 89
 | UK 4 US alt. 32 | written by Bono, The Edge, Adam Clayton & Larry Mullen Jr. |
| 85. | 02/2006 | | 89
 | UK 87 US alt. 7 | written by JT Woodruff, Casey Calvert, Micah Carli, Matt Ridenour & Eron Bucciarelli |
| 86. | 01/2006 | | 88
 | UK 14 US alt. 15 | written by Richard Archer |
| 87. | 07/2006 | | 88
 | UK ✫1 | [Sport Relief 2006] written by Tom Fletcher, Danny Jones, Dougie Poynter, Harry Judd & Jason Perry |
| 88. | 11/2006 | | 88
 | UK ✫1 | written by Tom Fletcher, Danny Jones, Dougie Poynter, Harry Judd, Jason Perry, Julian Emery & Daniel P. Carter |
| 89. | 09/2006 | | 88
 | US alt. 7 | written by Brendan Benson & Jack White |
| 90. | 07/2006 | | 87
 | UK 37 US rock 24 US alt. 32 | written by Matthew Tuck, Michael "Padge" Paget, Jason James & Michael "Moose" Thomas |
| 91. | 03/2006 | | 87
 | US 6 UK 47 US AC 3 | [Jive Digital] written by Nick Lachey, Jess Cates, Emanuel Kiriakou & Lindy Robbins |
| 92. | 09/2006 | | 86
 | US 38 UK 36 US alt. 17 | [Capitol Digital] written by Damian Kulash Jr. |
| 93. | 04/2006 | | 84
 | UK 7 US alt. 27 | written by Nathan Connolly, Gary Lightbody, Jonny Quinn, Tom Simpson & Paul Wilson |
| 94. | 11/2006 | | 82
 | US rock 24 US alt. 25 | written by Jim Ward, Paul Hinojos, Matt Miller & Tony Hajjar |
| 95. | 01/2006 | | 80
 | US 12 UK 21 US AC 19 | [RCA Digital] written by Chantal Kreviazuk, Raine Maida, Kara DioGuardi & Kelly Clarkson |
| 96. | 03/2006 | | 78
 | US 7 UK 162 | [R] [Decaydance Digital] written by Ryan Ross |
| 97. | 04/2006 | | 78
 | UK 2 | written by Danny McNamara, Richard McNamara, Steve Firth, Mike Heaton, Mickey Dale & Martin Glover |
| 98. | 07/2006 | | 77
 | US 14 UK 115 US AC ✫1 | [Aware Digital] written by John Mayer |
| 99. | 02/2006 | | 76
 | US rock 20 US alt. 27 | written by Chris Taylor Brown, Peter Charell, Aaron Montgomery & Simon Ormandy |
| 100. | 02/2006 | | 76
 | UK 69 US alt. 10 | written by Ben Gibbard & Chris Walla |